The goal of this project is to establish a Bay Area resource for evaluating the effectiveness of composting on the decay of pharmaceutical and other potentially toxic organic compounds, and facilitate the widespread use of compost as a safe solution to the greenhouse gas crisis.

Matter of Trust is the fiscal sponsor for this Andersen Lab project led by Dr. Gary Andersen, Microbial Ecology Department Head, Senior Scientist Lawrence Berkeley National Laboratory, Adjunct Professor UC Berkeley Department of Environmental Science, Policy and Management. The project is funded by the San Francisco Department of the Environment.

Little is known about the rate of contamination of compost with pharmaceuticals and other potentially toxic compounds. Feedstocks for compost production often include animal and human waste from sources such as dairy and Class A biosolids. As a consequence of the ingestion of many common pharmaceuticals, including antibiotics and preventative medications, this starting material has the potential to contain a number of emerging pharmaceutical contaminants. As a first step in understanding the extent of contamination and the potential for control measures we need to accurately assess the concentrations of contaminating pharmaceuticals and determine the extent of their breakdown during the composting process.

After an initial successful trial of examining the extent for breakdown of two defined compounds, ibuprofen and ciprofloxacin, we have concentrated on increasing the accuracy of the chemical detection methods to identify very low levels of these pharmaceuticals in a chemically complex background of the compost. For this work our goal has been to detect the pharmaceuticals and their breakdown products in compost samples over a period of time, typically weeks. Before we start the next round of spiking defined concentrations of pharmaceuticals, such as ibuprofen and ciprofloxacin, into the staring compost material we have been focusing on the development of rigorous calibration standards to more accurately measure microbial-specific degradation through bacterial secondary metabolism. We have been injecting stock solutions of pharmaceuticals into compost, and optimizing the extraction methods to precisely identify the remaining pharmaceuticals plus their breakdown products through liquid chromatography coupled to mass spectrometry. Prior to this grant, these extracts were directly injected into a mass spectrometer, where sensitivity and quantification were poor.

We have coupled an Agilent HPLC (High Performance Liquid Chromatography) system to a Velos-Pro ion trap mass spectrometer to achieve better detection accuracy and sensitivity. HPLC is an instrumental technique that separates different chemicals in a mixture and typically measures concentrations of the outgoing chemicals using a detector (e.g. UV-Vis detector). With the combination of HPLC and ESI-MS (HPLC-ESI-MS), the samples are fed into the HPLC, separated, detected by the UV-Vis detector producing an HPLC chromatogram, then injected into the mass spec individually, producing a mass spectrum. This enhances the ability to collect far more accurate data, more easily determine breakdown products, and avoid damage to the mass spectrometer during repeated soil chemistry measurements.


The photograph below shows the HPLC detector on the right connected to the nano-electrospray ionization mass spectrometer (nano-ESI-MS). Up to 100 samples can be placed into the autoloader on the center-left of the HPLC pictured for batch processing. The extracted from the compost is separated by polar-charge into thousands of different groups of chemical compounds, simplifying the analysis at any one point. The nano-ESI-MS has extremely low sample consumption so molecular weight determination and structural investigation is possible for each of the thousands of subsamples. The entire collection of subsamples can be measured in a half hour. So far, we have increased our sensitivity of ibuprofen detection by many orders of magnitude.

Ibuprofen signals at various concentrations have been tested with the HPLC-ESI-MS system and correlated with the UV-VIS spectra. In the near future, samples from microbially active compost treatment will be subjected to a similar analysis and decay dynamics of Ibuprofen will be elucidated and correlated to bioassay measurements being conducted in the Andersen lab.

The addition of this new equipment for this project, thanks to this grant, provides the highest level of sensitivity for the detection of pharmaceutical compounds in complex environmental matrices. The combination of the existing unique microbial characterization facilities with this addition of the state-of-the-art chemical detection capabilities has made the Berkeley National Lab the most advanced research laboratory for the characterization of compost in the world at this time!

More Andersen Lab research can be found at:


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Date: 2016-08-17

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